PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_04164.1_g00003.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 163aa    MW: 18033.4 Da    PI: 10.2023
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_04164.1_g00003.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.54e-1980134155
                      AP2   1 sgykGVrwdkkrgrWvAeIrdpse.ngkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                              ++++GVr+++ +g+W+AeIr+ +   g+r r +lg+f+taeeAa a+++a  +l+g
  Rsa1.0_04164.1_g00003.1  80 KKFRGVRQRP-WGKWAAEIRCGRAlKGRRDRLWLGTFDTAEEAALAYDNAVVQLNG 134
                              59********.**********54433367*********************988877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381233.9E-371161IPR017392AP2/ERF transcription factor ERF/PTI6
CDDcd000186.34E-2380141No hitNo description
SuperFamilySSF541714.71E-1981143IPR016177DNA-binding domain
SMARTSM003802.3E-3081148IPR001471AP2/ERF domain
PfamPF008471.0E-1281130IPR001471AP2/ERF domain
PROSITE profilePS5103221.62881142IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-2781142IPR001471AP2/ERF domain
PRINTSPR003672.2E-118293IPR001471AP2/ERF domain
PRINTSPR003672.2E-11108124IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MKRIVRISFT DAEATDSSSG EEETEEVSEA SHARRRGKRL VNEIVINPSD SDNKLDVCKT  60
RFKIRIPPEI LKATAAEGKK KFRGVRQRPW GKWAAEIRCG RALKGRRDRL WLGTFDTAEE  120
AALAYDNAVV QLNGPHAPTN FSFPAENQEV KIVAGASAVA RGA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-1580149470ATERF1
3gcc_A1e-1580149470ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894010.0AC189401.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB057E05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009104928.16e-99PREDICTED: ethylene-responsive transcription factor ERF070-like
SwissprotQ9C9951e-85ERF70_ARATH; Ethylene-responsive transcription factor ERF070
TrEMBLM4CIA37e-99M4CIA3_BRARP; Uncharacterized protein
STRINGBra003936.1-P2e-98(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40002359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71130.14e-74ERF family protein